Home
 
News
 
About p53
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Structure
 
 
Analysis Tools
 
Help
 
About Us
 
Acknowledgement
 
Links
 
FAQs
 
Feedback
 
 
 
  About p53 > Regulatory Pathways  
     
  Maintained By: p53 KnowledgeBase Team
Primary Data: Pathway Assist, Biocarta, GenMAPP, Reactome, KEGG and MIM (Click for Details)
 
     

The p53 protein is known to regulate the expression of genes involved in critical cell processes such as the induction of apoptosis, cell cycle arrest and DNA repair.  What is known about p53 regulatory pathways have been presented in other public databases and are listed below in the section 'Pathway Maps Online' together with other p53-related pathways.  A core regulatory network for p53 have also been presented in Aguda et al. (2005) and the authors have pointed out the relationship between the p53 regulatory pathways to cell death and cell survival decisions.  Additionally, the significance of these pathways to cell fate is determined by the presence of negative and positive feedback loops.  The interaction between positive feedback loops and between positive and negative feedback loops also seem to play a role.  The first section 'Feedback Loops in the p53 Core Regulatory Network' is an attempt to present the feedback loops and provide interaction evidence from Pathway Studio.  It is also discussed in more detail in Aguda et al. (2005) and is based on a recent review article by Harris and Levine (2005).

 

Feedback Loops in the p53 Core Regulatory Network

p53 Core Regulatory Network


Information from Pathway Studio regarding the interactions in each loop are given below.  Click here to learn how to interpret the pathway studio networks.
   
p53-mdm2 negative feedback loop
p53-mdm2 Direct interactions
Shortest Paths
Common targets: Complex
Common targets: Protein
Common targets: Functional Class
Common targets: Cell Process

p53-akt loop p53-pten-pip3-akt-mdm2 Direct interactions
Shortest Paths
Common targets: Complex
Common targets: Protein
Common targets: Functional Class
Common targets: Cell Process


p53-p21-CDK2-mdm2 loop p53-p21-cdk2-mdm2 Direct interactions
Shortest Paths
Common targets: Complex
Common targets: Protein
Common targets: Functional Class
Common targets: Cell Process



p53-arf-mdm2 loop p53-arf-mdm2 Direct interactions
Shortest Paths
Common targets: Complex
Common targets: Protein
Common targets: Functional Class
Common targets: Cell Process


p53-SIAH1- ß-catenin-ARF loop p53-siah1-catenin-arf Direct interactions
Shortest Paths
Common targets: Complex
Common targets: Protein
Common targets: Functional Class
Common targets: Cell Process


p53-cyclinG-mdm2 loop p53-mdm2-cyclinG Direct interactions
Shortest Paths
Common targets: Complex
Common targets: Protein
Common targets: Functional Class
Common targets: Cell Process


p53-p38MAPk-WIP1 loop p53-p38mapk-wip1 Direct interactions
Shortest Paths
Common targets: Complex
Common targets: Protein
Common targets: Functional Class
Common targets: Cell Process

 

Pathway Maps Online


Below are major sources of molecular cellular pathways that are available free on the web.  Only pathway maps that involve p53 are included in the list below.

 
 
Biocarta Pathways involving p53

Genmapp Pathways involving p53

KEGG Pathways involving p53

Reactome pathways involving p53

Kohn Interaction Maps involving p53
 
Links to other Pathway Resources


    General Pathway Resources
        Pathway Resource List

    Interactions & Pathways Databases
        BIND (Biomolecular Interaction Database)
        eMIM - Molecular Interaction Maps
        aMAZE
        Dynamic Signaling Maps
        INOH - Integrating Network Objects with Hierarchies
        CMAP Pathway Interaction Database
        NCGR PathDB

    Pathway Models Repositories
        Biomodels
        CellML Model Repository
        GeneNet:  Math models of gene networks

    Pathways Database Development Platforms
        PATIKA
        CellDesigner
        Case Pathways Database System

    Pathways Database Exchange Formats
        BioPAX
        SBML
        PSI-MI

    Commercial Pathways Databases & Analysis Software
        STKE (Signal Transduction Knowledge Environment)
        Pathway Studio
        PathArt - Jubilant Biosys
        Ingenuity Pathways Analysis
        TRANSPATH

    
Cellware:
To address the need for accurate modeling of cellular processes, an integrated platform, CELLWARE was developed at BII to build quantitative models of cellular processes, perform network homology and topography analysis. It is based on a click-and-drag format, with the goal of modeling signaling, metabolic and gene regulatory pathways within a deterministic or stochastic framework. Work is in progress to connect Cellware with protein-protein interaction, molecular structure and Gene Ontology databases.


Biocarta Pathways that involve p53   [top]
Apoptotic Signaling in Response to DNA Damage
ATM Signaling Pathway
Cell Cycle: G1/S Check Point
Cell Cycle: G2/M Checkpoint
Chaperones modulate interferon Signaling Pathway
Double Stranded RNA Induced Gene Expression
HIV-I Nef: negative effector of Fas and TNF
Hypoxia and p53 in the Cardiovascular system
Overview of telomerase protein component gene hTert Transcriptional Regulation
p53 Signaling Pathway
RB Tumor Suppressor/Checkpoint Signaling in response to DNA damage
Regulation of cell cycle progression by Plk3
Regulation of transcriptional activity by PML
Rho cell motility signaling pathway
Role of BRCA1, BRCA2 and ATR in Cancer Susceptibility
Telomeres, Telomerase, Cellular Aging, and Immortality
Tumor Suppressor Arf Inhibits Ribosomal Biogenesis
 
Genmapp Pathways that involve p53   [top]
Apoptosis
Cell cycle_KEGG
G1 to S cell cycle_Reactome
 
KEGG Pathways that involve p53   [top]
MAPK signaling pathway - hsa04010
Wnt signaling pathway - hsa04310
Cell cycle - hsa04110
Apoptosis - hsa04210
Amyotrophic lateral sclerosis (ALS) - hsa05030
Huntington's disease - hsa05040
 
Reactome pathways that involve p53   [top]
p53-Dependent G1/S DNA damage checkpoint [Homo sapiens]
p53-Independent G1/S DNA damage checkpoint [Homo sapiens]
p53-Independent DNA Damage Response [Homo sapiens]
p53-Dependent G1 DNA Damage Response [Homo sapiens]
Transcriptional activation of p53 responsive genes [Homo sapiens]
Stabilization of p53 [Homo sapiens]

 
     
  IMPORTANT: This section contains data that may be subject to third-party constraints. It is your responsibility to ensure that your use and exploitation of the data does not infringe the rights of such third parties. We can neither comment on the validity of their claims nor grant permission regarding the use or exploitation of the data.  
   
 
Copyright © 2005
Terms of Use
Bioinformatics Institute