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  About p53 > Haplotypes  
     
  Maintained By: p53 KnowledgeBase Team
Primary Data: International HapMap Project and HapBlock (Click for Details) 		 
     
Haplotype Information

Haplotype Information
Population Category:Caucasian
Population Description:CEU - Utah residents with ancestry from Northern & Western Europe
  
Haplotype Blocking Program:HapBlock
Program Settings:Gene Name: TP53
Population: CEU - CEPH (Utah Residents with ancestry from northern and western Europe)
Nucleotide Position: Chr 17:7722305-7841352
No. of Samples: 61
Maximum Length of Haplotypes (No. of SNPs): 29
Maximum number of SNPs a block can extend: 250
Algorithm for Block Partitioning: Minimize total number of tag SNPs
Type of Input Data: Genotype Data (unrelated individuals) - most likely haplotype pairs identified from PL-EM
Method for Block Definitions: LD Measure D’ (α = 0.95, β = 0.80 )
Method for tag SNP Definitions: LD Measure (r-square) (α = 0.80, β = 0.05)
Permutation Test: No


Haplotype Blocks    

Snp No. 28 (tag) rs839721 Snp No. 27 rs2543541 Snp No. 26 (tag) rs16956936 Snp No. 25 (tag) rs2543540 Snp No. 24 (tag) rs11867551 Snp No. 23 (tag) rs307627 Snp No. 28 (tag) rs839721 Snp No. 27 rs2543541 Snp No. 26 (tag) rs16956936 Snp No. 25 (tag) rs2543540 Snp No. 24 (tag) rs11867551 Snp No. 23 (tag) rs307627 Snp No. 28 (tag) rs839721 Snp No. 27 rs2543541 Snp No. 26 (tag) rs16956936 Snp No. 25 (tag) rs2543540 Snp No. 24 (tag) rs11867551 Snp No. 23 (tag) rs307627 Snp No. 28 (tag) rs839721 Snp No. 27 rs2543541 Snp No. 26 (tag) rs16956936 Snp No. 25 (tag) rs2543540 Snp No. 24 (tag) rs11867551 Snp No. 23 (tag) rs307627 Snp No. 28 (tag) rs839721 Snp No. 27 rs2543541 Snp No. 26 (tag) rs16956936 Snp No. 25 (tag) rs2543540 Snp No. 24 (tag) rs11867551 Snp No. 23 (tag) rs307627 Snp No. 28 (tag) rs839721 Snp No. 27 rs2543541 Snp No. 26 (tag) rs16956936 Snp No. 25 (tag) rs2543540 Snp No. 24 (tag) rs11867551 Snp No. 23 (tag) rs307627 Snp No. 28 (tag) rs839721 Snp No. 27 rs2543541 Snp No. 26 (tag) rs16956936 Snp No. 25 (tag) rs2543540 Snp No. 24 (tag) rs11867551 Snp No. 23 (tag) rs307627 Snp No. 28 (tag) rs839721 Snp No. 27 rs2543541 Snp No. 26 (tag) rs16956936 Snp No. 25 (tag) rs2543540 Snp No. 24 (tag) rs11867551 Snp No. 23 (tag) rs307627 Snp No. 28 (tag) rs839721 Snp No. 27 rs2543541 Snp No. 26 (tag) rs16956936 Snp No. 25 (tag) rs2543540 Snp No. 24 (tag) rs11867551 Snp No. 23 (tag) rs307627 Snp No. 28 (tag) rs839721 Snp No. 27 rs2543541 Snp No. 26 (tag) rs16956936 Snp No. 25 (tag) rs2543540 Snp No. 24 (tag) rs11867551 Snp No. 23 (tag) rs307627 Snp No. 28 (tag) rs839721 Snp No. 26 (tag) rs16956936 Snp No. 25 (tag) rs2543540 Snp No. 24 (tag) rs11867551 Snp No. 23 (tag) rs307627 0.01 0.01 0.01 0.03 0.02 0.07 0.14 Snp No. 22 (tag) rs3744258 Snp No. 21 (tag) rs1544724 0.01 0.03 0.03 0.14 0.04 0.15 0.25 Snp No. 22 (tag) rs3744258 Snp No. 21 (tag) rs1544724 0.01 0.04 0.06 0.13 0.09 0.24 0.20 0.18 Snp No. 22 (tag) rs3744258 Snp No. 21 (tag) rs1544724 Snp No. 22 (tag) rs3744258 Snp No. 21 (tag) rs1544724 0.01 0.01 Snp No. 19 (tag) rs7640 Snp No. 18 rs2287497 Snp No. 17 rs2287499 Snp No. 16 (tag) rs8064946 Snp No. 15 (tag) rs2078486 0.02 0.01 0.06 Snp No. 19 (tag) rs7640 Snp No. 18 rs2287497 Snp No. 17 rs2287499 Snp No. 16 (tag) rs8064946 Snp No. 15 (tag) rs2078486 0.11 0.03 0.05 Snp No. 19 (tag) rs7640 Snp No. 18 rs2287497 Snp No. 17 rs2287499 Snp No. 16 (tag) rs8064946 Snp No. 15 (tag) rs2078486 0.02 0.04 0.16 Snp No. 19 (tag) rs7640 Snp No. 18 rs2287497 Snp No. 17 rs2287499 Snp No. 16 (tag) rs8064946 Snp No. 15 (tag) rs2078486 0.12 0.58 0.72 Snp No. 19 (tag) rs7640 Snp No. 18 rs2287497 Snp No. 17 rs2287499 Snp No. 16 (tag) rs8064946 Snp No. 15 (tag) rs2078486 Snp No. 19 (tag) rs7640 Snp No. 16 (tag) rs8064946 Snp No. 15 (tag) rs2078486 Snp No. 13 (tag) rs2909430 Snp No. 12 (tag) rs12951053 0.01 0.01 0.01 0.14 Snp No. 13 (tag) rs2909430 Snp No. 12 (tag) rs12951053 0.02 0.09 0.06 Snp No. 13 (tag) rs2909430 Snp No. 12 (tag) rs12951053 0.02 0.06 0.08 0.21 1.23 Snp No. 13 (tag) rs2909430 Snp No. 12 (tag) rs12951053 Snp No. 13 (tag) rs2909430 Snp No. 12 (tag) rs12951053 Snp No. 10 (tag) rs1641510 Snp No. 9 (tag) rs1642763 0.03 0.03 0.46 Snp No. 10 (tag) rs1641510 Snp No. 9 (tag) rs1642763 0.09 0.03 0.58 Snp No. 10 (tag) rs1641510 Snp No. 9 (tag) rs1642763 0.06 0.13 0.54 Snp No. 10 (tag) rs1641510 Snp No. 9 (tag) rs1642763 Snp No. 10 (tag) rs1641510 Snp No. 9 (tag) rs1642763 Snp No. 8 rs1619016 Snp No. 7 rs1641536 Snp No. 6 (tag) rs1641537 Snp No. 5 (tag) rs1641544 Snp No. 4 (tag) rs2955617 Snp No. 3 (tag) rs6259 Snp No. 2 (tag) rs858521 Snp No. 1 (tag) rs13894 Snp No. 0 (tag) rs12150660 0.01 0.01 Snp No. 8 rs1619016 Snp No. 7 rs1641536 Snp No. 6 (tag) rs1641537 Snp No. 5 (tag) rs1641544 Snp No. 4 (tag) rs2955617 Snp No. 3 (tag) rs6259 Snp No. 2 (tag) rs858521 Snp No. 1 (tag) rs13894 Snp No. 0 (tag) rs12150660 0.01 0.03 Snp No. 8 rs1619016 Snp No. 7 rs1641536 Snp No. 6 (tag) rs1641537 Snp No. 5 (tag) rs1641544 Snp No. 4 (tag) rs2955617 Snp No. 3 (tag) rs6259 Snp No. 2 (tag) rs858521 Snp No. 1 (tag) rs13894 Snp No. 0 (tag) rs12150660 0.08 0.03 0.02 Snp No. 8 rs1619016 Snp No. 7 rs1641536 Snp No. 6 (tag) rs1641537 Snp No. 5 (tag) rs1641544 Snp No. 4 (tag) rs2955617 Snp No. 3 (tag) rs6259 Snp No. 2 (tag) rs858521 Snp No. 1 (tag) rs13894 Snp No. 0 (tag) rs12150660 0.08 0.02 0.03 Snp No. 8 rs1619016 Snp No. 7 rs1641536 Snp No. 6 (tag) rs1641537 Snp No. 5 (tag) rs1641544 Snp No. 4 (tag) rs2955617 Snp No. 3 (tag) rs6259 Snp No. 2 (tag) rs858521 Snp No. 1 (tag) rs13894 Snp No. 0 (tag) rs12150660 0.02 0.04 0.13 Snp No. 8 rs1619016 Snp No. 7 rs1641536 Snp No. 6 (tag) rs1641537 Snp No. 5 (tag) rs1641544 Snp No. 4 (tag) rs2955617 Snp No. 3 (tag) rs6259 Snp No. 2 (tag) rs858521 Snp No. 1 (tag) rs13894 Snp No. 0 (tag) rs12150660 0.17 0.03 0.07 Snp No. 8 rs1619016 Snp No. 7 rs1641536 Snp No. 6 (tag) rs1641537 Snp No. 5 (tag) rs1641544 Snp No. 4 (tag) rs2955617 Snp No. 3 (tag) rs6259 Snp No. 2 (tag) rs858521 Snp No. 1 (tag) rs13894 Snp No. 0 (tag) rs12150660 0.06 0.10 0.23 Snp No. 8 rs1619016 Snp No. 7 rs1641536 Snp No. 6 (tag) rs1641537 Snp No. 5 (tag) rs1641544 Snp No. 4 (tag) rs2955617 Snp No. 3 (tag) rs6259 Snp No. 2 (tag) rs858521 Snp No. 1 (tag) rs13894 Snp No. 0 (tag) rs12150660 0.08 0.47 0.21 Snp No. 8 rs1619016 Snp No. 7 rs1641536 Snp No. 6 (tag) rs1641537 Snp No. 5 (tag) rs1641544 Snp No. 4 (tag) rs2955617 Snp No. 3 (tag) rs6259 Snp No. 2 (tag) rs858521 Snp No. 1 (tag) rs13894 Snp No. 0 (tag) rs12150660 Snp No. 6 (tag) rs1641537 Snp No. 5 (tag) rs1641544 Snp No. 4 (tag) rs2955617 Snp No. 3 (tag) rs6259 Snp No. 2 (tag) rs858521 Snp No. 1 (tag) rs13894 Snp No. 0 (tag) rs12150660

Block_0
Tag Snp Snp Number Nucleotide Position Snp Id Description Details
Yes 0 - rs12150660 - -
Yes 1 - rs13894 - -
Yes 2 - rs858521 - -
Yes 3 - rs6259 - -
Yes 4 - rs2955617 - -
Yes 5 - rs1641544 - -
Yes 6 - rs1641537 - -
No 7 - rs1641536 - -
No 8 - rs1619016 - -
 
Block_1
Tag Snp Snp Number Nucleotide Position Snp Id Description Details
Yes 9 - rs1642763 - -
Yes 10 - rs1641510 - -
 
Block_2
Tag Snp Snp Number Nucleotide Position Snp Id Description Details
Yes 12 14201 rs12951053 Intron-7 (Intronic) Details
Yes 13 12964 rs2909430 Intron-4 (Intronic) Details
 
Block_3
Tag Snp Snp Number Nucleotide Position Snp Id Description Details
Yes 15 8550 rs2078486 Intron-1 (Intronic) Details
Yes 16 2331 rs8064946 Intron-1 (Intronic) Details
No 17 - rs2287499 - -
No 18 - rs2287497 - -
Yes 19 - rs7640 - -
 
Block_4
Tag Snp Snp Number Nucleotide Position Snp Id Description Details
Yes 21 - rs1544724 - -
Yes 22 - rs3744258 - -
 
Block_5
Tag Snp Snp Number Nucleotide Position Snp Id Description Details
Yes 23 - rs307627 - -
Yes 24 - rs11867551 - -
Yes 25 - rs2543540 - -
Yes 26 - rs16956936 - -
No 27 - rs2543541 - -
Yes 28 - rs839721 - -
 


Results Generated By:
iHAP: Integrated Haplotype Analysis Pipeline

Prediction By:
HapBlock: Haplotype Block Partitioning and Tag SNP selection software
BIOINFORMATICS 2005 Vol. 21, No 1:131-134
Kui Zhang, Zhaohui Qin, Ting Chen, Jun S. Liu, Michael S. Waterman and Fengzhu Sun.
  
     
  IMPORTANT: This section contains data that may be subject to third-party constraints. It is your responsibility to ensure that your use and exploitation of the data does not infringe the rights of such third parties. We can neither comment on the validity of their claims nor grant permission regarding the use or exploitation of the data.  
   
 
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